Hello.. I think I may have the same, or a very similar, issue. Were you able to get a solution for this?
I have recently installed the theme in my Shopify store, and after installation my Shopify analytics now show no traffic what-so-ever. I believe the FB Pixel got disconnected in the process as well. After working through FB, re-activating, and manually adding the Pixel code to the <head> it seems to have fixed that issue at least, but it has not done anything to correct the Shopify dashboard. Is there a step of the installation that I missed that had info on this?